heres my thought
3sgte = strong, cheap, but remember to do hg while is out. 5g can get you a 2.3 fully built engine from ats racing too
3sge beams = strong, expensive there is not much aftermarket support for this engine unless you have deep pockets and could custom parts
2zzge = glass engine, expensive. the swap alone going to be a pain. here are all the weakness, oil pump gear explode because they are weak as the oil pan have a bad baffle so during 1g the oil pick up doesn't work and draw air causing air bubbles that destroy the pump gear. the mmc liner in sleeve are great but once they are out of spec you got two option for the block, junk or re-sleeve. valve tend to drop as well. c60 tranny is a weak tranny as well, gear are tiny compare to a alltrac or mr2 tranny.
i own all three and know.
heres my suggestion. if you going to race your car alot 3sgte, if you dd and just want a unique appearance 3s beams, lift is good but not always ;D in the end is up to you. now if you get a yaris 2zzge will be fun in that